Description Usage Arguments Value Author(s)
.pickLoc
selects two branches which meet the criteria specified by
the arguments
1 2 3 |
tree |
A phylo object |
data |
A count table (a matrix or a data frame). It has tree leaves in rows and samples from different conditions in columns. |
from.A |
The branch node label of branch A. In simulation, we select two
branches (A & B) to have differential abundance under different conditions.
If from.A is specified, then branch A is fixed. If from.A is NULL, one can
find a suitable branch which meets the criteria specified in |
minTip.A |
The minimum number of leaves in branch A |
maxTip.A |
The maximum number of leaves in branch A |
minTip.B |
The minimum number of leaves in branch B |
maxTip.B |
The maximum number of leaves in branch B |
minPr.A |
The minimum abundance proportion of leaves in branch A |
maxPr.A |
The maximum abundance proportion of leaves in branch A |
ratio |
The proportion ratio of branch B to branch A. This value is
used to select branches(see Details). If there are no branches having
exactly this ratio, the pair with the value closest to |
a data frame of one row
Ruizhu Huang
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