plot_deviation: Plot deviations

In markrobinsonuzh/iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

Plot deviations

Description

Plot the deviations between observed scores and the continuous truth variable.

Usage

plot_deviation(
  cobraplot,
  title = "",
  stripsize = 15,
  titlecol = "black",
  xaxisrange = NULL,
  plottype = "boxplot",
  dojitter = TRUE,
  transf = "raw"
)

Arguments

cobraplot	A COBRAPlot object.
title	A character string giving the title of the plot.
stripsize	A numeric value giving the size of the strip text, when the results are stratified by an annotation.
titlecol	A character string giving the color of the title.
xaxisrange	A numeric vector with two elements, giving the lower and upper boundary of the x-axis, respectively.
plottype	Either "boxplot" or "violinplot", indicating what type of plot to make.
dojitter	A logical indicating whether to include jittered data points or not.
transf	A character indicating the transformation to apply to the deviations before plotting. Must be one of "raw", "absolute" or "squared"

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                   aspects = "deviation")
cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2",
                                   incltruth = TRUE)
plot_deviation(cobraplot)

markrobinsonuzh/iCOBRA documentation built on Nov. 7, 2024, 7:11 a.m.