dat.oncoPrint: dat.oncoPrint
In margarethannum/gnomeR: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
View source: R/make-oncoprint-dat.R
Description
Enables creation of a matrix used to generate an OncoPrint heatmap.
Usage
1
dat.oncoPrint(gen.dat, clin.dat = NULL)
Arguments
gen.dat
A binary matrix or dataframe, with patients as rows and features as columns. Note that the names of the
columns must end in ".Del" or ".Amp" to recognize copy number alterations. (see create.bin.matrix for more details on this format).
clin.dat
An optional clinical file, including only the features the user wishes to add to the plot. Default is NULL.
Value
mat : a matrix ready to be plotted using plot.Oncoprint().
margarethannum/gnomeR documentation built on Feb. 26, 2020, 8:16 p.m.
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Description Usage Arguments Value
View source: R/make-oncoprint-dat.R
Description
Enables creation of a matrix used to generate an OncoPrint heatmap.
Usage
1 | dat.oncoPrint(gen.dat, clin.dat = NULL)
|
Arguments
gen.dat |
A binary matrix or dataframe, with patients as rows and features as columns. Note that the names of the columns must end in ".Del" or ".Amp" to recognize copy number alterations. (see create.bin.matrix for more details on this format). |
clin.dat |
An optional clinical file, including only the features the user wishes to add to the plot. Default is NULL. |
Value
mat : a matrix ready to be plotted using plot.Oncoprint().
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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