testingGroup: Testing set phenotypes

In marchion/switchBox: Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Description

A factor with two levels describing the phenotypes for the testing data (Buyse et al cohort, (see the mammaPrintData package).

Usage

data(testingData)

Format

The matTesting factor contains phenotypic information for the 307 samples of the testing dataset.

Details

This phenotype factor corresponds to the breast cancer patients' cohort published by Buyse and colleagues in JNCI (2006). The gene expression matrix was obtained from the mammaPrintData package as described by Marchionni and colleagues in BMC Genomics (2013).

Author(s)

Bahman Afsari [e-mail], Luigi Marchionni [e-mail]

References

See switchBox for the references.

See Also

trainingGroup

Examples

### Load gene expression data for the test set
data(testingData)

### Show the class of the ``testingGroup'' object
class(testingGroup)

### Show group variable
table(testingGroup)

marchion/switchBox documentation built on May 9, 2019, 4:07 p.m.