plus-AbSeqRep-AbSeqRep-method: Combines 2 AbSeqRep objects together for comparison

In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Combines 2 AbSeqRep objects together for comparison

Usage

## S4 method for signature 'AbSeqRep,AbSeqRep'
e1 + e2

Arguments

e1	AbSeqRep object.
e2	AbSeqRep object.

Value

AbSeqCRep object. Calling abseqR's functions on this object will always result in a comparison.

See Also

abseqReport returns a list of AbSeqReps

Examples

# Use example data from abseqR as abseqPy's output, substitute this
# with your own abseqPy output directory
abseqPyOutput <- tempdir()
file.copy(system.file("extdata", "ex", package = "abseqR"), abseqPyOutput, recursive=TRUE)
samples <- abseqReport(file.path(abseqPyOutput, "ex"), report = 0)

# The provided example data has PCR1, PCR2, and PCR3 samples contained within
# pcr1 and pcr2 are instances of AbSeqRep
pcr1 <- samples[["PCR1"]]
pcr2 <- samples[["PCR2"]]

# pcr12 is an instance of AbSeqCRep
pcr12 <- pcr1 + pcr2

# you can now call the report function on this object
# report(pcr12)           # uncomment this line to execute report

malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.