plus-AbSeqCRep-AbSeqCRep-method: Combines 2 AbSeqCRep objects together for comparison

In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Combines 2 AbSeqCRep objects together for comparison

Usage

## S4 method for signature 'AbSeqCRep,AbSeqCRep'
e1 + e2

Arguments

e1	AbSeqCRep.
e2	AbSeqCRep.

Value

AbSeqCRep object. Calling abseqR's functions on this object will always result in a comparison.

See Also

abseqReport returns a list of AbSeqReps

Examples

# Use example data from abseqR as abseqPy's output, substitute this
# with your own abseqPy output directory
abseqPyOutput <- tempdir()
file.copy(system.file("extdata", "ex", package = "abseqR"), abseqPyOutput, recursive=TRUE)
samples <- abseqReport(file.path(abseqPyOutput, "ex"), report = 0)

# The provided example data has PCR1, PCR2, and PCR3 samples contained within
# pcr12 and pcr13 are instances of AbSeqCRep
pcr12 <- samples[["PCR1"]] + samples[["PCR2"]]
pcr13 <- samples[["PCR1"]] + samples[["PCR3"]]

# all_S is also an instance of AbSeqCRep
all_S <- pcr12 + pcr13

# you can now call the report function on this object
# report(all_S)           # uncomment this line to execute report

malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.