dot-plotDiversityCurves: Plots rarefaction, recapture, and de-dup plots for specified...

In malhamdoosh/abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Plots rarefaction, recapture, and de-dup plots for specified region

Usage

.plotDiversityCurves(region, diversityDirectories, sampleNames,
  mashedNames, diversityOut, .save = TRUE)

Arguments

region	string type. One of: "cdr", "cdr_v", and "fr". "cdr" means CDR1-3, "cdr_v" means CDR3 and V only, and finally "fr" means FR1-4.
diversityDirectories	list type. List of directories to diversity dir
sampleNames	vector type. 1-1 with diversityDirectories
mashedNames	string type. Prefix for output files using "mashed-up"
diversityOut	string type. Output directory sample names
.save	logical type. Save ggplot object?

Value

Nothing

malhamdoosh/abseqR documentation built on May 24, 2019, 12:36 a.m.