degMB: Distribution of expression of DE genes compared to the...
In lpantano/DEGreport: Report of DEG analysis

degMB

R Documentation

Distribution of expression of DE genes compared to the background

Description

Distribution of expression of DE genes compared to the background

Usage

degMB(tags, group, counts, pop = 400)

Arguments

`tags`	List of genes that are DE.
`group`	Character vector with group name for each sample in the same order than counts column names.
`counts`	Matrix with counts for each samples and each gene Should be same length than pvalues vector.
`pop`	number of random samples taken for background comparison

Value

ggplot2 object

Examples

data(humanGender)
library(DESeq2)
idx <- c(1:10, 75:85)
dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
  colData(humanGender)[idx,], design=~group)
dds <- DESeq(dds)
res <- results(dds)
degMB(row.names(res)[1:20], colData(dds)[["group"]],
  counts(dds, normalized = TRUE))

lpantano/DEGreport documentation built on Feb. 28, 2024, 12:01 a.m.