.Rbuildignore
.gitignore
.travis.yml
DEGreport.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/AllMethods.R
R/DEGreport-package.R
R/clustering.R
R/covariate.R
R/geneInfo.R
R/genePlots.R
R/geom_cor.R
R/humanGender-data.R
R/methods.R
R/report.R
R/results.R
R/signature.R
R/volcanoPlot.R
R/zzz.R
README.md
_pkgdown.yml
batchx/deg-patterns/.gitignore
batchx/deg-patterns/Dockerfile
batchx/deg-patterns/deg-patterns.py
batchx/deg-patterns/install.deg-patterns.R
batchx/deg-patterns/install.deg-patterns2.R
batchx/deg-patterns/manifest/example1.png
batchx/deg-patterns/manifest/example2.png
batchx/deg-patterns/manifest/manifest.json
batchx/deg-patterns/manifest/picture.png
batchx/deg-patterns/manifest/readme.md
batchx/deg-patterns/run.deg-patterns.R
data/datalist
data/geneInfo.rda
data/humanGender.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/DEGreport.R
docs/articles/DEGreport.Rnw
docs/articles/DEGreport.html
docs/articles/DEGreport.tex
docs/articles/DEGreport_examples.html
docs/articles/DEGreport_examples_files/figure-html/check-factor-1.png
docs/articles/DEGreport_examples_files/figure-html/corcov-1.png
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docs/reference/createReport.html
docs/reference/deg.html
docs/reference/degCheckFactors-1.png
docs/reference/degCheckFactors-2.png
docs/reference/degCheckFactors-3.png
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docs/sitemap.xml
inst/sticker/degreport.png
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inst/sticker/sticker.R
man/DEGSet.Rd
man/DEGreport-deprecated.Rd
man/createReport.Rd
man/deg.Rd
man/degCheckFactors.Rd
man/degColors.Rd
man/degComps.Rd
man/degCorCov.Rd
man/degCovariates.Rd
man/degDefault.Rd
man/degFilter.Rd
man/degMA.Rd
man/degMB.Rd
man/degMDS.Rd
man/degMV.Rd
man/degMean.Rd
man/degMerge.Rd
man/degObj.Rd
man/degPCA.Rd
man/degPatterns.Rd
man/degPlot.Rd
man/degPlotCluster.Rd
man/degPlotWide.Rd
man/degQC.Rd
man/degResults.Rd
man/degSignature.Rd
man/degSummary.Rd
man/degVB.Rd
man/degVar.Rd
man/degVolcano.Rd
man/geneInfo.Rd
man/geom_cor.Rd
man/humanGender.Rd
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tests/testthat.R
tests/testthat/test_class.R
tests/testthat/test_cluster.R
tests/testthat/test_plots.R
tests/testthat/test_results.R
vignettes/DEGreport.Rmd