velmeshev_gene_df: Velmeshev et al. DEGs

In linnykos/eSVD2: eSVD2 for performing the eSVD-DE for cohort-wide differential expression analysis

Velmeshev et al. DEGs

Description

From https://www.science.org/doi/10.1126/science.aav8130, data supplement S4 (i.e., aav8130_data-s4.xls)

Usage

velmeshev_gene_df

Format

## 'velmeshev_gene_df' A data frame with 692 rows (genes) and 14 columns:

Cell type

Cell type that the DEG was in

gene ID

ENSG gene ID

Gene name

Gene name

Gene biotype

Biotype

Fold change

See original paper for details

Sample fold change

See original paper for details

q value

See original paper for details

correlation (bulk mRNA/bulkized nuclear RNA)

See original paper for details

Epilepsy DEG

boolean

gene group

boolean

SFARI gene

boolean

Satterstrom

boolean

Sanders

boolean

cell type-specific expression

boolean

Source

<https://www.science.org/doi/10.1126/science.aav8130>

Examples

## Not run: 
# How the data was loaded
tib <- readxl::read_xls("aav8130_data-s4.xls",
sheet = "ASD_DEGs")
velmeshev_gene_df <- as.data.frame(tib)
usethis::use_data(velmeshev_gene_df)

## End(Not run)

linnykos/eSVD2 documentation built on July 17, 2024, 12:01 a.m.