gccount: Count bases in sequence
In lgatto/sequences: Generic and Biological Sequences
gccount R Documentation
Count bases in sequence
Description
Returns the number of 'A', 'C', 'G' and 'T' bases in the
'inseq' sequence string.
Usage
gccount(inseq)
Arguments
inseq
a DNA sequence string.
Details
This function calls a C primitive
Value
A numeric of length 4
Author(s)
Laurent Gatto
Examples
s <- "AAAACCCGGT"
cnt <- gccount(s)
cnt
stopifnot(cnt == table(strsplit(s, "")))
lgatto/sequences documentation built on Dec. 2, 2024, 1:57 a.m.
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| gccount | R Documentation |
Count bases in sequence
Description
Returns the number of 'A', 'C', 'G' and 'T' bases in the 'inseq' sequence string.
Usage
gccount(inseq)Arguments
inseq |
a DNA sequence string. |
Details
This function calls a C primitive
Value
A numeric of length 4
Author(s)
Laurent Gatto
Examples
s <- "AAAACCCGGT"
cnt <- gccount(s)
cnt
stopifnot(cnt == table(strsplit(s, "")))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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