ggmanh_annotation_gds: gnomAD Variant Annotation in SeqArray Format
In leejs-abv/ggmanh: Visualization Tool for GWAS Result
ggmanh_annotation_gds R Documentation
gnomAD Variant Annotation in SeqArray Format
Description
ggmanh provides a GDS file whose path is accessible by default_gds_path.
The original annotation file is from the gnomAD browser v2.1.1 release, available in this link: https://gnomad.broadinstitute.org/downloads.
This gds file contains variants in the exome with the global minor allele frequency \ge 0.0002, and has been manually curated
to fit the file size requirement for R Bioconductor packages.
Format
A GDS file with 1015430 variants with chromosome, position, allele, gene symbol, Ensembl VEP Consequence, and predicted LoF.
leejs-abv/ggmanh documentation built on Sept. 19, 2024, 10:13 p.m.
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| ggmanh_annotation_gds | R Documentation |
gnomAD Variant Annotation in SeqArray Format
Description
ggmanh provides a GDS file whose path is accessible by default_gds_path.
The original annotation file is from the gnomAD browser v2.1.1 release, available in this link: https://gnomad.broadinstitute.org/downloads.
This gds file contains variants in the exome with the global minor allele frequency \ge 0.0002, and has been manually curated
to fit the file size requirement for R Bioconductor packages.
Format
A GDS file with 1015430 variants with chromosome, position, allele, gene symbol, Ensembl VEP Consequence, and predicted LoF.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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