README.md

In lcolladotor/biocthistest: Ejemplo de biocthis para ConectaR2021

biocthistest

The goal of biocthistest is to …

Installation instructions

Get the latest stable R release from CRAN. Then install biocthistest using from Bioconductor the following code:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("biocthistest")

And the development version from GitHub with:

BiocManager::install("lcolladotor/biocthistest")

Example

This is a basic example which shows you how to solve a common problem:

library("biocthistest")
## basic example code

What is special about using README.Rmd instead of just README.md? You can include R chunks like so:

summary(cars)
#>      speed           dist       
#>  Min.   : 4.0   Min.   :  2.00  
#>  1st Qu.:12.0   1st Qu.: 26.00  
#>  Median :15.0   Median : 36.00  
#>  Mean   :15.4   Mean   : 42.98  
#>  3rd Qu.:19.0   3rd Qu.: 56.00  
#>  Max.   :25.0   Max.   :120.00

Citation

Below is the citation output from using citation('biocthistest') in R. Please run this yourself to check for any updates on how to cite biocthistest.

print(citation('biocthistest'), bibtex = TRUE)
#> 
#> Collado-Torres L (2021). _Ejemplo de biocthis para ConectaR2021_. doi:
#> 10.18129/B9.bioc.biocthistest (URL:
#> https://doi.org/10.18129/B9.bioc.biocthistest),
#> https://github.com/lcolladotor/biocthistest/biocthistest - R package
#> version 0.99.0, <URL:
#> http://www.bioconductor.org/packages/biocthistest>.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {Ejemplo de biocthis para ConectaR2021},
#>     author = {Leonardo Collado-Torres},
#>     year = {2021},
#>     url = {http://www.bioconductor.org/packages/biocthistest},
#>     note = {https://github.com/lcolladotor/biocthistest/biocthistest - R package version 0.99.0},
#>     doi = {10.18129/B9.bioc.biocthistest},
#>   }
#> 
#> Collado-Torres L (2021). "Ejemplo de biocthis para ConectaR2021."
#> _bioRxiv_. doi: 10.1101/TODO (URL: https://doi.org/10.1101/TODO), <URL:
#> https://www.biorxiv.org/content/10.1101/TODO>.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Article{,
#>     title = {Ejemplo de biocthis para ConectaR2021},
#>     author = {Leonardo Collado-Torres},
#>     year = {2021},
#>     journal = {bioRxiv},
#>     doi = {10.1101/TODO},
#>     url = {https://www.biorxiv.org/content/10.1101/TODO},
#>   }

Please note that the biocthistest was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.

Code of Conduct

Please note that the biocthistest project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

Development tools

• Continuous code testing is possible thanks to GitHub actions through usethis, remotes, and rcmdcheck customized to use Bioconductor’s docker containers and BiocCheck.
• Code coverage assessment is possible thanks to codecov and covr.
• The documentation website is automatically updated thanks to pkgdown.
• The code is styled automatically thanks to styler.
• The documentation is formatted thanks to devtools and roxygen2.

For more details, check the dev directory.

This package was developed using biocthis.

lcolladotor/biocthistest documentation built on Jan. 29, 2021, 12:07 a.m.