stat_mismatch-method: Calculate mismatch summary

In lawremi/ggbio: Visualization tools for genomic data

Calculate mismatch summary

Description

Calculate mismatch summary

Usage

## for GRanges
## S4 method for signature 'GRanges'
stat_mismatch(data, ..., bsgenome, 
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)
## for BamFile
## S4 method for signature 'BamFile'
stat_mismatch(data, ..., bsgenome, which,
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)

Arguments

data	A GRanges or BamFile object.
...	Extra parameters such as aes() passed to geom_rect, geom_alignment, or geom_segment.
bsgenome	BSgenome object.
which	GRanges object to subset the data.
xlab	Label for x
ylab	Label for y
main	Title for plot.
geom	The geometric object to use display the data.
show.coverage	whether to show coverage as background or not.

Value

A 'Layer'.

Author(s)

Tengfei Yin

lawremi/ggbio documentation built on Nov. 1, 2023, 2:40 p.m.