get_irefindex_list: Retrieve irefindex for a given bait

In lagelab/Genoppi: genoppi

Retrieve irefindex for a given bait

Description

Use irefindex_table data to get IRefIndex interactors and non-interactors of bait. See ?irefindex_table for more details about the data set.

Usage

get_irefindex_list(bait, n = 1)

Arguments

bait	string. name of bait protein
n	numeric. Minimum number of publications that this interaction has been described in.

Value

data.frame containing gene and significant columns for all non-bait IRefIndex genes (significant=T for IRefIndex interactors of bait). NULL if bait not found in IRefIndex.

Examples

## Not run: 
df1 <- get_irefindex_list('BCL2',n = 1)

## End(Not run)

lagelab/Genoppi documentation built on Oct. 13, 2022, 2:36 p.m.