.Rbuildignore
.devcontainer/Dockerfile
.devcontainer/devcontainer.json
.devcontainer/library-scripts/README.md
.devcontainer/library-scripts/common-debian.sh
.gitattributes
.github/workflows/docker.yml
.github/workflows/r-win.yml
.github/workflows/r.yml
.gitignore
.gitmodules
DESCRIPTION
Dockerfile
Dockerfile.cpu
Dockerfile.gpu
LICENSE
NAMESPACE
OmicSelector.Rproj
R/OmicSelector_OmicSelector.R
R/OmicSelector_PCA.R
R/OmicSelector_PCA_3D.R
R/OmicSelector_benchmark.R
R/OmicSelector_best_signature_de.R
R/OmicSelector_best_signature_proposals.R
R/OmicSelector_best_signature_proposals_meta11.R
R/OmicSelector_combat.R
R/OmicSelector_correct_miRNA_names.R
R/OmicSelector_correlation_plot.R
R/OmicSelector_counts_to_log10tpm.R
R/OmicSelector_create_formula.R
R/OmicSelector_differential_expression_ttest.R
R/OmicSelector_diverge_color.R
R/OmicSelector_docker.update_progress.R
R/OmicSelector_download_tissue_miRNA_data_from_TCGA.R
R/OmicSelector_get_benchmark.R
R/OmicSelector_get_benchmark_methods.R
R/OmicSelector_get_features_from_benchmark.R
R/OmicSelector_heatmap.3.R
R/OmicSelector_heatmap.R
R/OmicSelector_iteratedRFE.R
R/OmicSelector_load_datamix.R
R/OmicSelector_load_extension.R
R/OmicSelector_log.R
R/OmicSelector_merge_formulas.R
R/OmicSelector_myclust.R
R/OmicSelector_mydist.R
R/OmicSelector_prepare_split.R
R/OmicSelector_process_tissue_miRNA_TCGA.R
R/OmicSelector_profileplot.R
R/OmicSelector_propensity_score_matching.R
R/OmicSelector_setup.R
R/OmicSelector_signiture_overlap.R
R/OmicSelector_table.R
R/OmicSelector_vulcano_plot.R
R/OmicSelector_xgboost.R
R/zzz.R
README.md
_config.yml
_pkgdown.yml
article/detectable_in_serum.csv
build.R
data/OmicSelector_tutorial_balanced_benchmark.rda
data/OmicSelector_tutorial_balanced_dataset.rda
data/OmicSelector_tutorial_balanced_mixed.rda
data/detectable_in_serum.RData
data/orginal_TCGA_data.rda
docker/.htpasswd
docker/1_formalcheckcsv.R
docker/1_preprocessing.sh
docker/benchmark.R
docker/best_signature.Rmd
docker/build.log
docker/build_package.sh
docker/codespaces.sh
docker/default
docker/default_public
docker/dev_docker-gpu.sh
docker/dev_php_update.sh
docker/docker_push.sh
docker/entrypoint.sh
docker/feature_selection.R
docker/jupyter_notebook_config.py
docker/jupyter_notebook_config_public.py
docker/keras.R
docker/logo.png
docker/merge_deeplearning.R
docker/nginx.conf
docker/own_analysis.R
docker/php.ini
docker/public_cron.sh
docker/radiant.R
docker/recover_fs.R
docker/register_jupyter.R
docker/rsession.sh
docker/rstudio.conf
docker/shiny-server.conf
docker/software_update.sh
docker/start_rstudio_server.sh
docker/update.R
docker/www.conf
example/Elias2017.csv
extensions/deeplearning.R
extensions/deeplearning.sh
extensions/deeplearning_settings.R
index.md
inst/extdata/Asakura2020/init.R
inst/extdata/wx/DearWXpub/GENE_LIST_TCGA_ASSEM.txt
inst/extdata/wx/DearWXpub/LICENSE
inst/extdata/wx/DearWXpub/Module_A.R
inst/extdata/wx/DearWXpub/README.md
inst/extdata/wx/DearWXpub/input_data_1.csv
inst/extdata/wx/DearWXpub/input_data_2.csv
inst/extdata/wx/DearWXpub/slp_wx_weights_best.hdf5
inst/extdata/wx/DearWXpub/src/03_featureselection_wx.log
inst/extdata/wx/DearWXpub/src/__pycache__/wx_core.cpython-36.pyc
inst/extdata/wx/DearWXpub/src/__pycache__/wx_core.cpython-37.pyc
inst/extdata/wx/DearWXpub/src/__pycache__/wx_hyperparam.cpython-36.pyc
inst/extdata/wx/DearWXpub/src/__pycache__/wx_hyperparam.cpython-37.pyc
inst/extdata/wx/DearWXpub/src/annotation.csv
inst/extdata/wx/DearWXpub/src/data.csv
inst/extdata/wx/DearWXpub/src/input_data_1.csv
inst/extdata/wx/DearWXpub/src/input_data_2.csv
inst/extdata/wx/DearWXpub/src/test-anno.csv
inst/extdata/wx/DearWXpub/src/test-data.csv
inst/extdata/wx/DearWXpub/src/train-anno.csv
inst/extdata/wx/DearWXpub/src/train-data.csv
inst/extdata/wx/DearWXpub/src/wx_core.py
inst/extdata/wx/DearWXpub/src/wx_core.pyc
inst/extdata/wx/DearWXpub/src/wx_example.py
inst/extdata/wx/DearWXpub/src/wx_gse_multi_class.py
inst/extdata/wx/DearWXpub/src/wx_hyperparam.py
inst/extdata/wx/DearWXpub/src/wx_hyperparam.pyc
inst/extdata/wx/DearWXpub/src/wx_konsta.py
inst/extdata/wx/DearWXpub/src/wx_konsta_z.py
inst/extdata/wx/DearWXpub/src/wx_tcga.py
inst/extdata/wx/DearWXpub/src/wyniki.npy
inst/extdata/wx/DearWXpub/src/wyniki.txt
inst/extdata/wx/DearWXpub/tcga_download.R
inst/extdata/wx/annotation.csv
inst/extdata/wx/data.csv
install.sh
man/OmicSelector_OmicSelector.Rd
man/OmicSelector_PCA.Rd
man/OmicSelector_PCA_3D.Rd
man/OmicSelector_benchmark.Rd
man/OmicSelector_best_signature_de.Rd
man/OmicSelector_best_signature_proposals.Rd
man/OmicSelector_best_signature_proposals_meta11.Rd
man/OmicSelector_combat.Rd
man/OmicSelector_correct_miRNA_names.Rd
man/OmicSelector_correlation_plot.Rd
man/OmicSelector_counts_to_log10tpm.Rd
man/OmicSelector_create_formula.Rd
man/OmicSelector_differential_expression_ttest.Rd
man/OmicSelector_diverge_color.Rd
man/OmicSelector_docker.update_progress.Rd
man/OmicSelector_download_tissue_miRNA_data_from_TCGA.Rd
man/OmicSelector_get_benchmark.Rd
man/OmicSelector_get_benchmark_methods.Rd
man/OmicSelector_get_features_from_benchmark.Rd
man/OmicSelector_heatmap.3.Rd
man/OmicSelector_heatmap.Rd
man/OmicSelector_iteratedRFE.Rd
man/OmicSelector_load_datamix.Rd
man/OmicSelector_load_extension.Rd
man/OmicSelector_log.Rd
man/OmicSelector_merge_formulas.Rd
man/OmicSelector_myclust.Rd
man/OmicSelector_mydist.Rd
man/OmicSelector_prepare_split.Rd
man/OmicSelector_process_tissue_miRNA_TCGA.Rd
man/OmicSelector_profileplot.Rd
man/OmicSelector_propensity_score_matching.Rd
man/OmicSelector_setup.Rd
man/OmicSelector_signature_overlap.Rd
man/OmicSelector_table.Rd
man/OmicSelector_vulcano_plot.Rd
man/OmicSelector_xgboost.Rd
pkgdown/extra.css
shiny/deeplearning_model/app.R
shiny/start/app.R
shiny/start/ui.html
shiny/start/www/bootstrap-theme.min.css
shiny/start/www/bootstrap.min.css
shiny/start/www/bootstrap.min.js
shiny/start/www/css/starter-template.css
shiny/start/www/lib/class.formr.dropdowns.php
shiny/start/www/lib/class.formr.forms.php
shiny/start/www/lib/class.formr.wrappers.php
shiny/start/www/lib/codemirror.css
shiny/start/www/lib/codemirror.js
shiny/start/www/logo.png
shiny/templete/app.R
shiny/tool_batch/app.R
shiny/tool_de/app.R
shiny/tool_heatmap/app.R
shiny/tool_impute/app.R
static/OmicSelector_awiski.jpeg
static/Tutorial.html
static/analysis.php
static/analysis_custom.php
static/api.php
static/bootstrap-theme.min.css
static/bootstrap.min.css
static/bootstrap.min.js
static/class.formr.php
static/composer.json
static/composer.lock
static/css/starter-template.css
static/gpu.php
static/index.php
static/inprogress.php
static/jquery-ui.js
static/konsta.js
static/lib/class.formr.dropdowns.php
static/lib/class.formr.forms.php
static/lib/class.formr.wrappers.php
static/lib/codemirror.css
static/lib/codemirror.js
static/logo.png
static/mode/r/r.js
static/monitor/.gitignore
static/monitor/LICENSE
static/monitor/README.md
static/monitor/ServerMonitor.php
static/monitor/cpu.json.php
static/monitor/disk.json.php
static/monitor/gauge/css/asPieProgress.css
static/monitor/gauge/css/asPieProgress.min.css
static/monitor/gauge/jquery-asPieProgress.es.js
static/monitor/gauge/jquery-asPieProgress.js
static/monitor/gauge/jquery-asPieProgress.min.js
static/monitor/index.php
static/monitor/memory.json.php
static/monitor/nbproject/project.properties
static/monitor/nbproject/project.xml
static/monitor/temperature.json.php
static/my_classes/_my.wrappers.php
static/my_classes/my.dropdowns.php
static/my_classes/my.forms.php
static/old_code.temp
static/process.php
static/redirect.php
static/report.php
static/shiny_app.php
static/software_update.php
static/start.php
static/start_custom.php
static/top.php
static/vendor/autoload.php
static/vendor/composer/ClassLoader.php
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static/vendor/composer/autoload_classmap.php
static/vendor/composer/autoload_files.php
static/vendor/composer/autoload_namespaces.php
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