IlluminaBodymapMeta: Metadata table for the included sample data
In kstammits/rgsepd: Gene Set Enrichment / Projection Displays
IlluminaBodymapMeta R Documentation
Metadata table for the included sample data
Description
The metadata table required to inform GSEPD of the sample/condition and abbreviated names for each column of the included 'counts' dataset. You should mirror this table's structure for your dataset.
Usage
data(IlluminaBodymapMeta)
Format
A data frame with 16 observations on the following 3 variables.
SampleA vector of the column names in your counts table, for the included sample data, it's four tissue types repeated four times each. For your data this must correspond to the column labels in the counts table.
ConditionThe sample categorizations for use in differential expression, this should also be a vector the same length as the number of columns in your counts table. Here we have 'A' for each Adipose, 'B' for each muscle type, and 'C' for the blood samples.
SHORTNAMEAbbreviated names for each sample to appear in plots.
Value
A dataframe of sample identifiers for the rgsepd::IlluminaBodymap matrix.
Examples
data(IlluminaBodymapMeta)
str(IlluminaBodymapMeta)
kstammits/rgsepd documentation built on Oct. 13, 2022, 6:43 p.m.
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| IlluminaBodymapMeta | R Documentation |
Metadata table for the included sample data
Description
The metadata table required to inform GSEPD of the sample/condition and abbreviated names for each column of the included 'counts' dataset. You should mirror this table's structure for your dataset.
Usage
data(IlluminaBodymapMeta)
Format
A data frame with 16 observations on the following 3 variables.
SampleA vector of the column names in your counts table, for the included sample data, it's four tissue types repeated four times each. For your data this must correspond to the column labels in the counts table.
ConditionThe sample categorizations for use in differential expression, this should also be a vector the same length as the number of columns in your counts table. Here we have 'A' for each Adipose, 'B' for each muscle type, and 'C' for the blood samples.
SHORTNAMEAbbreviated names for each sample to appear in plots.
Value
A dataframe of sample identifiers for the rgsepd::IlluminaBodymap matrix.
Examples
data(IlluminaBodymapMeta) str(IlluminaBodymapMeta)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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