R/writeModules.R

In krumsieklab/MoDentify: Phenotype-driven module identification

#' Export Modules
#'
#'
#' @param modules a list as returned by \code{\link{identifyModules}}
#' @param file a name for the txt file that should be stored
#' @importFrom utils write.table
#' @export
writeModules <- function(modules, file) {
  exportdat <- modules$modules[modules$nodes, on = .(moduleID), nomatch = 0]
  exportdat[, module.pval := exp(-as.numeric(module.score))]
  exportdat[, node.pval := seed.score]
  exportdat[, module.pval.after.adding.node := exp(-score.after.adding)]
  exportdat <- exportdat[order(moduleID, order.added)]
  write.table(exportdat, file, sep = "\t", row.names = FALSE)
}