Files in krumsieklab/MoDentify
Phenotype-driven module identification
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
krumsieklab/MoDentify documentation built on March 24, 2021, 9:01 p.m.
DESCRIPTION
NAMESPACE
NEWS
R/MoDentify.R
R/aggregatedMean.R
R/calculateModuleRepresentatives.R
R/calculateModuleScore.R
R/deleteDuplicate.R
R/deleteSupergraphs.R
R/drawModule.R
R/drawModules.R
R/drawNetworkWithModules.R
R/eigenMetabolites.R
R/generateNetwork.R
R/generatePathwaysNetwork.R
R/getMergedModules.R
R/getNeighborsForModule.R
R/getToMerge.R
R/ggEdgesBetweenAttributes.R
R/ggExplainedVariance.R
R/greedyModuleSelection.R
R/identifyModules.R
R/linearScoring.R
R/orderAnnotation.R
R/writeModules.R
README.md
data/qmdiab.annos.RData
data/qmdiab.data.RData
data/qmdiab.phenos.RData
inst/CITATION
inst/REFERENCES.bib
inst/extdata/qmdiab.annotations.txt
inst/extdata/qmdiab.network.txt
inst/figures/MoDentify_modules.png
inst/figures/MoDentify_pathway_modules.png
inst/figures/MoDentify_scheme.png
inst/script/getQmdiabData.R
man/MoDentify-package.Rd
man/aggregatedMean.Rd
man/calculateModuleRepresentatives.Rd
man/calculateModuleScore.Rd
man/deleteDuplicates.Rd
man/deleteSupergraphs.Rd
man/drawModule.Rd
man/drawModules.Rd
man/drawNetworkWithModules.Rd
man/eigenMetabolites.Rd
man/generateNetwork.Rd
man/generatePathwaysNetwork.Rd
man/getMergedModules.Rd
man/getNeighborsForModule.Rd
man/getToMerge.Rd
man/ggEdgesBetweenAttributes.Rd
man/ggExplainedVariance.Rd
man/greedyModuleSelection.Rd
man/identifyModules.Rd
man/linearScoring.Rd
man/orderAnnotation.Rd
man/qmdiab.annos.Rd
man/qmdiab.data.Rd
man/qmdiab.phenos.Rd
man/writeModules.Rd
tests/testthat.R
tests/testthat/test_getNeighborsForModule.R
tests/testthat/test_identifyModules.R
vignettes/MoDentify.Rmd
