Files in kkdey/ecostructure
Visualizing Structure in ecological site-species abundance data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/dsp_create_from_gdb.R
R/dsp_create_from_survey.R
R/dsp_motif.R
R/dsp_plot_map.R
R/dsp_to_matrix.R
R/ecos_blocks.R
R/ecos_fit.R
R/ecos_nullmodel.R
R/ecos_plot_pie.R
R/ecos_prepare_by_phylo.R
R/ecos_prepare_by_trait.R
R/mask_climate_raster_by_GoM.R
README.md
analysis/geostructure_plot.png
analysis/geostructure_plot_aus.png
analysis/index.Rmd
bin/TopicMetaDiversity.R
bin/TopicMetaMeta.R
bin/data_prep.R
bin/ecostructure.2.001.jpeg
bin/ecostructure.2.001.png
bin/ecostructure.2.key
bin/geostructure_globe.tiff
bin/krige_counts.R
bin/order_counts.R
bin/test_blockstructure.R
bin/topic_meta_diversity.R
bin/topic_meta_meta.R
bin/toy_disp_create.R
data/README.md
data/australia_birds.rda
data/australia_model.rda
data/dispersion_field_ex.rda
data/example_theta.rda
data/himalayan_birds.rda
data/indian_birds_pa.rda
data/phylo_tree.rda
data/pres_ab_fit.rda
docs/.nojekyll
docs/ecostructure.2.001.jpeg
docs/geostructure_plot.png
docs/geostructure_plot_aus.png
docs/index.html
docs/index_files/figure-html/unnamed-chunk-12-1.png
docs/index_files/figure-html/unnamed-chunk-14-1.png
docs/index_files/figure-html/unnamed-chunk-21-1.png
docs/index_files/figure-html/unnamed-chunk-25-1.png
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap.min.css
docs/site_libs/bootstrap-3.3.5/css/cerulean.min.css
docs/site_libs/bootstrap-3.3.5/css/cosmo.min.css
docs/site_libs/bootstrap-3.3.5/css/flatly.min.css
docs/site_libs/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
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docs/site_libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
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docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/site_libs/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/site_libs/bootstrap-3.3.5/css/journal.min.css
docs/site_libs/bootstrap-3.3.5/css/lumen.min.css
docs/site_libs/bootstrap-3.3.5/css/paper.min.css
docs/site_libs/bootstrap-3.3.5/css/readable.min.css
docs/site_libs/bootstrap-3.3.5/css/sandstone.min.css
docs/site_libs/bootstrap-3.3.5/css/simplex.min.css
docs/site_libs/bootstrap-3.3.5/css/spacelab.min.css
docs/site_libs/bootstrap-3.3.5/css/united.min.css
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docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/site_libs/bootstrap-3.3.5/js/bootstrap.js
docs/site_libs/bootstrap-3.3.5/js/bootstrap.min.js
docs/site_libs/bootstrap-3.3.5/js/npm.js
docs/site_libs/bootstrap-3.3.5/shim/html5shiv.min.js
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docs/site_libs/font-awesome-5.0.13/js/fa-v4-shims.min.js
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docs/site_libs/highlightjs-9.12.0/default.css
docs/site_libs/highlightjs-9.12.0/highlight.js
docs/site_libs/highlightjs-9.12.0/textmate.css
docs/site_libs/jquery-1.11.3/jquery.min.js
docs/site_libs/jqueryui-1.11.4/README
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docs/site_libs/jqueryui-1.11.4/index.html
docs/site_libs/jqueryui-1.11.4/jquery-ui.css
docs/site_libs/jqueryui-1.11.4/jquery-ui.js
docs/site_libs/jqueryui-1.11.4/jquery-ui.min.css
docs/site_libs/jqueryui-1.11.4/jquery-ui.min.js
docs/site_libs/jqueryui-1.11.4/jquery-ui.structure.css
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docs/site_libs/navigation-1.1/codefolding.js
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docs/site_libs/navigation-1.1/tabsets.js
docs/site_libs/tocify-1.9.1/jquery.tocify.css
docs/site_libs/tocify-1.9.1/jquery.tocify.js
ecostructure.Rproj
inst/extdata/dispersion_field_mat.rda
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.README.html
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.VERSION.txt
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.cpg
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.dbf
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.prj
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.shp
inst/extdata/ne_110m_admin_0_boundary_lines_land/ne_110m_admin_0_boundary_lines_land.shx
inst/extdata/ne_110m_coastline/ne_110m_coastline.README.html
inst/extdata/ne_110m_coastline/ne_110m_coastline.VERSION.txt
inst/extdata/ne_110m_coastline/ne_110m_coastline.cpg
inst/extdata/ne_110m_coastline/ne_110m_coastline.dbf
inst/extdata/ne_110m_coastline/ne_110m_coastline.prj
inst/extdata/ne_110m_coastline/ne_110m_coastline.shp
inst/extdata/ne_110m_coastline/ne_110m_coastline.shx
inst/extdata/ne_110m_land/ne_110m_land.README.html
inst/extdata/ne_110m_land/ne_110m_land.VERSION.txt
inst/extdata/ne_110m_land/ne_110m_land.cpg
inst/extdata/ne_110m_land/ne_110m_land.dbf
inst/extdata/ne_110m_land/ne_110m_land.prj
inst/extdata/ne_110m_land/ne_110m_land.shp
inst/extdata/ne_110m_land/ne_110m_land.shx
inst/extdata/toy_site_matrix.csv
man/australia_birds.Rd
man/australia_model.Rd
man/dispersion_field_ex.Rd
man/dsp_create_from_gdb.Rd
man/dsp_create_from_survey.Rd
man/dsp_motif.Rd
man/dsp_plot_map.Rd
man/dsp_to_matrix.Rd
man/ecos_blocks.Rd
man/ecos_fit.Rd
man/ecos_nullmodel.Rd
man/ecos_plot_pie.Rd
man/ecos_prepare_by_phylo.Rd
man/ecos_prepare_by_trait.Rd
man/himalayan_birds.Rd
man/indian_birds_pa.Rd
man/mask_climate_raster_by_geo_motif.Rd
man/phylo_tree.Rd
man/pres_ab_fit.Rd
vignettes/ecostructure.Rmd
vignettes/ecostructure.bbl
vignettes/ecostructure.html
vignettes/geostructure_plot.tiff
vignettes/geostructure_plot_aus.tiff
vignettes/maps.png
