mutation_sig: Compositional mutational signature data, with mismatch and...
In kkdey/Logolas: EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices
Description
Compositional mutational signature data, with mismatch and flanking base
frequencies reported
A dataset of compositional weights for mismatches in the "0"the position
(center of signature) and
that of the bases A, C, G, T for two left flanking bases (-1, -2) and two
right flanking bases (1, 2). The data here corresponds to the 12th
mutational signature profile from Shiraishi et al 2015 paper.
Usage
1
Format
A matrix with 10 rows (4 bases and 6 types of mismatches) and
5 columns (center - 0, flanking bases
1,2 on the left and flanking bases 1, 2 on the right of the center)
kkdey/Logolas documentation built on May 20, 2019, 10:30 a.m.
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Description
Compositional mutational signature data, with mismatch and flanking base frequencies reported A dataset of compositional weights for mismatches in the "0"the position (center of signature) and that of the bases A, C, G, T for two left flanking bases (-1, -2) and two right flanking bases (1, 2). The data here corresponds to the 12th mutational signature profile from Shiraishi et al 2015 paper.
Usage
1 |
Format
A matrix with 10 rows (4 bases and 6 types of mismatches) and 5 columns (center - 0, flanking bases 1,2 on the left and flanking bases 1, 2 on the right of the center)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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