tempOutputFolder: Generate temporary output folder

In kjohnsen/MMAPPR2: Mutation Mapping Analysis Pipeline for Pooled RNA-Seq

Description

Conveniently creates a timestamp-named temporary directory

Usage

tempOutputFolder()

Value

The path to the temporary directory

Examples

if (requireNamespace('MMAPPR2data', quietly=TRUE)
        & all(Sys.which(c("samtools", "vep")) != "")) {
    mmappr_param <- MmapprParam(refFasta = MMAPPR2data::goldenFasta(),
                                wtFiles = MMAPPR2data::exampleWTbam(),
                                mutFiles = MMAPPR2data::exampleMutBam(),
                                species = "danio_rerio",
                                outputFolder = tempOutputFolder())
}

kjohnsen/MMAPPR2 documentation built on Oct. 1, 2019, 7:01 p.m.