empirical_lambda: Estimate the dropout parameter
In kieranrcampbell/mfa: Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations
empirical_lambda R Documentation
Estimate the dropout parameter
Description
Estimate the dropout parameter
Usage
empirical_lambda(y, lower_limit = 0)
Arguments
y
A cell-by-gene expression matrix
lower_limit
The limit below which expression counts as 'dropout'
Value
The estimated lambda
Examples
synth <- create_synthetic(C = 20, G = 5, zero_negative = TRUE, model_dropout = TRUE)
lambda <- empirical_lambda(synth$X)
kieranrcampbell/mfa documentation built on March 27, 2022, 5:20 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| empirical_lambda | R Documentation |
Estimate the dropout parameter
Description
Estimate the dropout parameter
Usage
empirical_lambda(y, lower_limit = 0)
Arguments
y |
A cell-by-gene expression matrix |
lower_limit |
The limit below which expression counts as 'dropout' |
Value
The estimated lambda
Examples
synth <- create_synthetic(C = 20, G = 5, zero_negative = TRUE, model_dropout = TRUE) lambda <- empirical_lambda(synth$X)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.