fit_null_model: Fit the null pseudotime model
In kieranrcampbell/embeddr: Laplacian eigenmaps & principal curves for pseudotemporal ordering of single-cell RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
This function fits the null expression profile in y (ie y ~ 1). A tobit model is
used to censor values less than min_expr
Usage
1
fit_null_model(sce, gene)
Arguments
sce
The SCESet object
gene
The gene name to fit
Value
An object returned by AER::tobit
Examples
1
2
3
4
5
library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
model <- fit_null_model(sce, 1) # fit for first gene
kieranrcampbell/embeddr documentation built on May 20, 2019, 9:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
This function fits the null expression profile in y (ie y ~ 1). A tobit model is used to censor values less than min_expr
Usage
1 | fit_null_model(sce, gene)
|
Arguments
sce |
The SCESet object |
gene |
The gene name to fit |
Value
An object returned by AER::tobit
Examples
1 2 3 4 5 | library(scater)
data('sc_example_counts') ; sce <- newSCESet(countData = sc_example_counts)
sce <- embeddr(sce)
sce <- fit_pseudotime(sce)
model <- fit_null_model(sce, 1) # fit for first gene
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.