orgdb_from_ah: Get an orgdb from an AnnotationHub taxonID.

In khughitt/EuPathDB: Provides access to pathogen annotation resources available on EuPathDB databases

Get an orgdb from an AnnotationHub taxonID.

Description

Ideally, annotationhub will one day provide a one-stop shopping source for a tremendous wealth of curated annotation databases, sort of like a non-obnoxious biomart. But for the moment, this function is more fragile than I would like.

Usage

orgdb_from_ah(ahid = NULL, title = NULL, species = NULL, type = "OrgDb")

Arguments

ahid	TaxonID from AnnotationHub
title	Title for the annotation hub instance
species	Species to download
type	Datatype to download

Value

An Orgdb instance

Author(s)

atb

See Also

AnnotationHub S4Vectors

Examples

## Not run: 
 orgdbi <- mytaxIdToOrgDb(taxid)

## End(Not run)

khughitt/EuPathDB documentation built on Nov. 4, 2023, 4:19 a.m.