pip_structure_plot: Make a structure plot of partitioned PIP by locus

In kevinlkx/mapgen: Multi-function software that performs enrichment, functionally-informed genetic fine-mapping and gene mapping

Make a structure plot of partitioned PIP by locus

Description

Making a structure plot of partitioned PIP by locus This function is adapted from the 'fastTopics' package https://stephenslab.github.io/fastTopics/

Usage

pip_structure_plot(
  mat,
  categories,
  colors,
  ticks = NULL,
  font.size = 9,
  highlight = NULL,
  xlab = "Locus",
  ylab = "Proportion",
  legend.title = "Category"
)

Arguments

mat	A matrix of the proportion of PIPs partitioned to each annotation category, rows are loci, columns are annotation categories.
categories	annotation categories
colors	Colors of the structure plot categories
ticks	Labels of x-axis
font.size	Font size of structure plot
highlight	Highlight a locus

kevinlkx/mapgen documentation built on March 31, 2024, 11:03 p.m.