create_panel: Create a CyTOF panel to be fill

In jvelezmagic/CyTOFHelpers:

Description

Create a CyTOF panel to be fill

Usage

create_panel(
  path,
  glob = "*.fcs",
  flowcore_params = list(truncate_max_range = FALSE),
  cytofkit2_params = list(mergeMethod = "all")
)

Arguments

path	Path to search for cytometry files.
glob	A wildcard aka globbing pattern (e.g. *.fcs) passed on to base::grep() to filter paths.
flowcore_params	Extra arguments passed to flowCore::read.flowSet().
cytofkit2_params	Extra arguments passed to cytofkit2::cytof_exprsMerge().

Value

A tibble with 3 columns:

1. fcs_colname: Column filled it with channels found in data.

2. antigen: Filled with NAs.

3. marker_class: Filled with NAs.

jvelezmagic/CyTOFHelpers documentation built on Feb. 5, 2022, 5:22 p.m.