Files in jtleek/sva-devel
Surrogate Variable Analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/ComBat.R
R/ComBat_seq.R
R/empirical.controls.R
R/f.pvalue.R
R/fstats.R
R/fsva.R
R/helper.R
R/helper_seq.R
R/irwsva.build.R
R/num.sv.R
R/psva.R
R/qsva.R
R/read.degradation.matrix.R
R/ssva.R
R/sva-package.R
R/sva.R
R/sva.check.R
R/sva_network.R
R/svaseq.R
R/twostepsva.build.R
inst/extdata/bwtool/SRR595926_degradeStats_polyA.txt
inst/extdata/bwtool/SRR604050_degradeStats_polyA.txt
inst/extdata/bwtool/SRR604098_degradeStats_polyA.txt
inst/extdata/bwtool/SRR607214_degradeStats_polyA.txt
inst/extdata/bwtool/SRR608456_degradeStats_polyA.txt
inst/extdata/region_matrix_all/gtex_5sample_region_matrix.txt
inst/extdata/region_matrix_one/SRR595926.cov
inst/extdata/region_matrix_one/SRR604050.cov
inst/extdata/region_matrix_one/SRR604098.cov
inst/extdata/region_matrix_one/SRR607214.cov
inst/extdata/region_matrix_one/SRR608456.cov
man/ComBat.Rd
man/ComBat_seq.Rd
man/empirical.controls.Rd
man/f.pvalue.Rd
man/fstats.Rd
man/fsva.Rd
man/irwsva.build.Rd
man/num.sv.Rd
man/psva.Rd
man/qsva.Rd
man/read.degradation.matrix.Rd
man/ssva.Rd
man/sva.Rd
man/sva.check.Rd
man/sva_network.Rd
man/svaseq.Rd
man/twostepsva.build.Rd
src/sva.c
src/symbols.rds
sva-devel.Rproj
tests/testthat.R
tests/testthat/test_combat_bladderbatch.R
tests/testthat/test_combat_bladderbatch_parallel.R
tests/testthat/test_combat_errors.R
tests/testthat/test_combat_sim.R
tests/testthat/test_combatseq.R
vignettes/sva.Rnw
vignettes/sva.bib
