train: Main training function.

In jonathan-mcmillan/csci3500: immune Cell Analysis Tool

Description

Main training function.

Usage

train(negatives, positives, prelist, postlist, field, pcut, minpublic,
  updateProgress)

Arguments

negatives	Dataframe of sequence frequencies in negative samples.
positives	Datafram of sequence frequencies in positive samples.
prelist	Vector of negative training samples.
postlist	Vector of positive training samples.
field	String containing the column or columns (space-delimited) of interest.
pcut	P-value threshold for fisher-exact test.
minpublic	Sequence frequency threshold to be considered.
updateProgress	Function for updating a progress bar in a Shiny interface.

Value

List containing both negtive (n) and positive (v) clonotype percentages.

jonathan-mcmillan/csci3500 documentation built on Jan. 31, 2020, 12:25 a.m.