plotVolcano-GreatJob-method: Make volcano plot

In jokergoo/rGREAT: GREAT Analysis - Functional Enrichment on Genomic Regions

Make volcano plot

Description

Make volcano plot

Usage

## S4 method for signature 'GreatJob'
plotVolcano(object, ontology, min_region_hits = 5,
    x_values = c("fold_enrichment", "z-score"),
    y_values = c("p_value", "p_adjust"),
    main = NULL)

Arguments

object	A GreatJob-class object returned by submitGreatJob.
ontology	A single ontology names. Valid values are in availableOntologies.
min_region_hits	Minimal number of input regions overlapping to the geneset associated regions.
x_values	Which values for the x-axis.
y_values	Which values for the y-axis.
main	Title of the plot.

Details

Since the enrichment is an over-representation test, it is only the half volcano.

Examples

# There is no example
NULL

jokergoo/rGREAT documentation built on March 28, 2024, 5:31 a.m.