anno_joyplot: Joyplot Annotation

In jokergoo/ComplexHeatmap: Make Complex Heatmaps

Joyplot Annotation

Description

Joyplot Annotation

Usage

anno_joyplot(x, which = c("column", "row"), gp = gpar(fill = "#000000"),
    scale = 2, transparency = 0.6,
    axis = TRUE, axis_param = default_axis_param(which),
    width = NULL, height = NULL)

Arguments

x	A matrix or a list. If x is a matrix or a data frame, columns correspond to observations.
which	Whether it is a column annotation or a row annotation?
gp	Graphic parameters for the boxes. The length of the graphic parameters should be one or the number of observations.
scale	Relative height of the curve. A value higher than 1 increases the height of the curve.
transparency	Transparency of the filled colors. Value should be between 0 and 1.
axis	Whether to add axis?
axis_param	parameters for controlling axis. See default_axis_param for all possible settings and default parameters.
width	Width of the annotation. The value should be an absolute unit. Width is not allowed to be set for column annotation.
height	Height of the annotation. The value should be an absolute unit. Height is not allowed to be set for row annotation.

Value

An annotation function which can be used in HeatmapAnnotation.

See Also

https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#joyplot-annotation

Examples

m = matrix(rnorm(1000), nc = 10)
lt = apply(m, 2, function(x) data.frame(density(x)[c("x", "y")]))
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row")
draw(anno, test = "joyplot")
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row", gp = gpar(fill = 1:10))
draw(anno, test = "joyplot + col")
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row", scale = 1)
draw(anno, test = "joyplot + scale")

m = matrix(rnorm(5000), nc = 50)
lt = apply(m, 2, function(x) data.frame(density(x)[c("x", "y")]))
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row", gp = gpar(fill = NA), scale = 4)
draw(anno, test = "joyplot")

jokergoo/ComplexHeatmap documentation built on Sept. 24, 2024, 4:48 p.m.