sigPway: A function checks if an object is from the one sample or two...

In jmarlab/pathVar: Methods to Find Pathways with Significantly Different Variability

Description

A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.

Usage

sigPway(pvalue_results, pvalue)

Arguments

pvalue_results	geneDistributionSet2 object and the output of the pathVarTwoSamples function or geneDistributionSet object and the output of the pathVarOneSample.
pvalue	the significance level to test.

Details

This function takes the output pathVarTwoSamples or pathVarOneSample and returns a significantPathway2 or significantPathway object specifying the significant pathway(s) and which gene(s) belongs to the significant pathway(s).

Value

A significantPathway2 object or significantPathway object is returned.

Author(s)

Laurence de Torrente, Samuel Zimmerman, Jessica Mar

Examples

results_2samples=pathVarTwoSamplesCont(bock,pways.kegg,groups=as.factor(c(rep(1,10),rep(2,10))),boot=1000,varStat="sd")
sig_kegg=sigPway(results_2samples,0.05)

jmarlab/pathVar documentation built on May 23, 2019, 9:02 p.m.