Man pages for jmarlab/pathVar
Methods to Find Pathways with Significantly Different Variability
| bock | Gene Expression Matrix of Published Data |
| diagnosticsVarPlots | Plots the average expression against variability using... |
| diagnosticsVarPlotsTwoSample | Plots the average expression against variability using... |
| geneDistributionSet2-class | Class '"pathVarTwoSamplesCont"' |
| geneDistributionSet3-class | Class '"pathVarTwoSamplesDisc"' |
| geneDistributionSet-class | Class '"geneDistributionSet"' |
| geneSet-class | Class '"geneSet"' |
| getGenes | Gets significant genes within a certain window of... |
| makeDBList | Puts your own list of pathways and genes related to them into... |
| pathVarOneSample | Compares the distribution of genes in each cluster to the... |
| pathVar-package | Detects pathways with different levels of variance than... |
| pathVarTwoSamplesCont | Compares the distribution of genes in each pathway for two... |
| pathVarTwoSamplesDisc | Compares the number of genes in clusters in each pathway for... |
| plotAllTwoSampleDistributionCounts | Compares the distribution of genes in clusters for every gene... |
| plotPway | Checks if an object is from the one sample or two samples... |
| pways.kegg | List containing pathway IDs, names, and genes in each pathway |
| pways.reactome | List containing pathway IDs, names, and genes in each pathway |
| saveAsPDF | Save the plots of the significant pathway or a chosen list of... |
| significantPathway2-class | Class '"significantPathway2"' |
| significantPathway3-class | Class '"significantPathway3"' |
| significantPathway-class | Class '"significantPathway"' |
| sigPway | A function checks if an object is from the one sample or two... |
