estParaQ: Estimation of parameter Q from expression table
In jingwyang/TreeExp: the R package for analyzing expression evolution based on RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
Estimation of parameter Q from expression table
Usage
1
Arguments
exptable
an exprssion level table: column corresponds to median expression value of all biological samples
within one taxa_subtaxa group; row corresponds to othologous genes
corrmatinv
an inversed correlation matrix between species
Value
returns a vector of parameter Qs from given expression table
Examples
1
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data('tetraExp')
species.group <- c("Human", "Chimpanzee", "Bonobo", "Gorilla",
"Macaque", "Mouse", "Opossum", "Platypus")
inv.corr.mat <- corrMatInv(tetraExp, taxa = species.group, subtaxa = "Brain")
brain.exptable <- exptabTE(tetraExp, taxa = species.group, subtaxa = "Brain" ,logrithm = TRUE)
brain.Q <- estParaQ(brain.exptable, corrmatinv = inv.corr.mat)
jingwyang/TreeExp documentation built on June 11, 2019, 6:17 p.m.
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Description Usage Arguments Value Examples
Description
Estimation of parameter Q from expression table
Usage
1 |
Arguments
exptable |
an exprssion level table: column corresponds to median expression value of all biological samples within one taxa_subtaxa group; row corresponds to othologous genes |
corrmatinv |
an inversed correlation matrix between species |
Value
returns a vector of parameter Qs from given expression table
Examples
1 2 3 4 5 6 | data('tetraExp')
species.group <- c("Human", "Chimpanzee", "Bonobo", "Gorilla",
"Macaque", "Mouse", "Opossum", "Platypus")
inv.corr.mat <- corrMatInv(tetraExp, taxa = species.group, subtaxa = "Brain")
brain.exptable <- exptabTE(tetraExp, taxa = species.group, subtaxa = "Brain" ,logrithm = TRUE)
brain.Q <- estParaQ(brain.exptable, corrmatinv = inv.corr.mat)
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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