plotDistance2Codon: Metaplot of P site distribution
In jianhong/ribosomeProfilingQC: Ribosome Profiling Quality Control

plotDistance2Codon

R Documentation

Metaplot of P site distribution

Description

Metaplot of P site distribution in all the CDS aligned by the start codon or stop codon.

Usage

plotDistance2Codon(
  reads,
  start = TRUE,
  anchor = 50,
  col = c(Frame_0 = "#009E73", Frame_1 = "#D55E00", Frame_2 = "#0072B2")
)

Arguments

`reads`	Output of assignReadingFrame.
`start`	Plot for start codon or stop codon.
`anchor`	The maximal xlim or (min, max) position for plot.
`col`	Colors for different reading frame.

Value

Invisible height of the barplot.

Examples

pcs <- readRDS(system.file("extdata", "samplePc.rds",
               package="ribosomeProfilingQC"))
plotDistance2Codon(pcs)
#plotDistance2Codon(pcs, start=FALSE)
#plotDistance2Codon(pcs, anchor=c(-10, 20))

jianhong/ribosomeProfilingQC documentation built on Nov. 3, 2024, 6:33 p.m.