API for jianhong/ribosomeProfilingQC
Ribosome Profiling Quality Control

Global functions
$,cvgd-method	Man page
$<-,cvgd-method	Man page
DESeq2normHelper	Source code
FLOSS	Man page Source code
PAmotif	Man page Source code
RPFsCounts	Source code
[[,cvgd,ANY,ANY-method	Man page
[[<-,cvgd,ANY,ANY,ANY-method	Man page
assignReadingFrame	Man page Source code
codonBias	Man page Source code
codonUsage	Man page Source code
countReads	Man page Source code
coverageDepth	Man page Source code
coverageRates	Man page Source code
cvgd	Man page Source code
cvgd-class	Man page
edgeRnormHelper	Source code
estimatePsite	Man page Source code
filterCDS	Man page Source code
fixSeqlevelsStyle	Source code
frameCounts	Man page Source code
getCvgs	Source code
getFPKM	Man page Source code
getFeatureLen	Source code
getORFscore	Man page Source code
getPsiteCoordinates	Man page Source code
ggBar	Man page Source code
metaPlot	Man page Source code
normBy	Man page Source code
normByDETools	Source code
normByRUVs	Man page Source code
normHelper	Source code
normalizeTEbyLoess	Man page Source code
plotDistance2Codon	Man page Source code
plotFrameDensity	Man page Source code
plotSpliceEvent	Man page Source code
plotTE	Man page Source code
plotTranscript	Man page Source code
prepareCDS	Man page Source code
prepareTxDb	Source code
readsDistribution	Man page Source code
readsEndPlot	Man page Source code
readsLenToKeep	Man page Source code
ribosomeReleaseScore	Man page Source code
shiftReads	Source code
shiftReadsByFrame	Man page Source code
show,cvgd-method	Man page
simulateRPF	Man page Source code
spliceEvent	Man page Source code
strandPlot	Man page Source code
summaryReadsLength	Man page Source code
switch.strand	Source code
translationalEfficiency	Man page Source code
vsnNormHelper	Source code