getData: Get the data for visualization.

In jianhong/dagLogo: dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory

Get the data for visualization.

Description

A helper function to get the data and the label for visualization.

Usage

getData(type, testDAUresults)

Arguments

type	A character vector of length 1, the type of metrics to display on y-axis. The available options are "diff" and "statistics", which are differences in amino acid usage at each position between the inputSet and the backgroundSet, and the Z-scores or odds ratios when Z-test or Fisher's exact test is performed to test the differential usage of amino acid at each position between the two sets.
testDAUresults	An object of testDAUresults-class, which contains results of testing differential amino acid usage).

Value

A list containing the following components: label A character vector of length 1. The type of data for visualization. dat A matrix of numeric data for visualization.

Author(s)

Haibo Liu

jianhong/dagLogo documentation built on Nov. 5, 2024, 7:46 a.m.