ESvolcanoplot: Plot enrichment score for one transcription factor

In jianhong/ATACseqTFEA: Transcription Factor Enrichment Analysis for ATAC-seq

Plot enrichment score for one transcription factor

Description

Plot GSEA style enrichment score curve.

Usage

ESvolcanoplot(
  TFEAresults,
  xlab = "Enrichment Score",
  ylab = "-log10(p value)",
  TFnameToShow = 20,
  significantCutoff = 0.05,
  col = c("red", "blue", "gray"),
  ...
)

Arguments

TFEAresults	A TFEAresults object. Output of TFEA.
xlab, ylab	character string giving label for x-axis/y-axis.
TFnameToShow	Transcription factor names to be drawn.
significantCutoff	Cutoff value for significant.
col	Color sets for the points.
...	parameter passed to pdf.

Value

ggplot object.

Examples

res <- system.file("extdata", "res.rds", package="ATACseqTFEA")
res <- readRDS(res)
ESvolcanoplot(TFEAresults=res)

jianhong/ATACseqTFEA documentation built on Nov. 5, 2024, 9:46 a.m.