README.md

In ivanek/seqLogo: Sequence logos for DNA sequence alignments

seqLogo - Plotting the position weight matrix of a DNA/RNA sequence motif as a sequence logo

Software status

 

| | Bioc (release) | Bioc (devel) | |:--------------------|----------------------------------------------------------------------------:|--------------------------------------------------------------------------------:| | OS | | | | Bioc Last Update | | | | Bioc Status | | | | GitHub Last Commit | | | | GitHub Actions | | | | Coverage | | |

Authors

• Oliver Bembom
• Robert Ivanek

Overview

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Installation

Release version

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("seqLogo", version = "release")

Developmental version

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("seqLogo", version = "devel")

Github

if (!requireNamespace("remotes", quietly = TRUE))
    install.packages("remotes")
remotes::install_github("ivanek/seqLogo")

Usage

For detailed instructions check the package vignette (release or developmental version). Or the GitHub.io page.

Citation

citation("seqLogo")

• Oliver Bembom and Robert Ivanek (2020). seqLogo: Sequence logos for DNA sequence alignments.

ivanek/seqLogo documentation built on May 4, 2023, 12:39 p.m.