topRDAhits: Get the top features associated with the RDA

In isglobal-brge/MEAL: Perform methylation analysis and facilitates differential expression analyses

Description

Get a list of the features significantly associated to the first two RDA components

Usage

topRDAhits(object, tPV = 0.05)

Arguments

object	ResultSet
tPV	numeric with the p-value threshold. Only features with a p-values below this threshold will be shown.

Value

data.frame with the features, the component, the correlation and the p-value

Examples

if (require(minfiData) & require(GenomicRanges)){
set <- ratioConvert(mapToGenome(MsetEx[1:10,]))
model <- model.matrix(~set$sex)
rda <- runRDA(set, model)
topRDAhits(rda)
}

isglobal-brge/MEAL documentation built on May 8, 2021, 8:05 p.m.