load_ctd_dise: Function to load the '.tsv.gz' file for disease

In isglobal-brge/CTDquerier: Package for CTDbase data query, visualization and downstream analysis

Function to load the .tsv.gz file for disease

Description

Function to load the .tsv.gz file for disease

Usage

load_ctd_dise(verbose = FALSE)

Arguments

verbose

(default FALSE) If set to TRUE messages and warnings are raised.

Details

The field included in the file (CTD_diseases.tsv.gz) are:

1. DiseaseName

2. DiseaseID (MeSH or OMIM identifier)

3. Definition

4. AltDiseaseIDs (alternative identifiers; '|'-delimited list)

5. ParentIDs (identifiers of the parent terms; '|'-delimited list)

6. TreeNumbers (identifiers of the disease's nodes; '|'-delimited list)

7. ParentTreeNumbers (identifiers of the parent nodes; '|'-delimited list)

8. Synonyms ('|'-delimited list)

9. SlimMappings (MEDIC-Slim mappings; '|'-delimited list)

Value

A data.frame with the content of the file "CTD_genes.tsv.gz"

Examples

if(download_ctd_dise()){
fdl <- load_ctd_dise()
dim( fdl )
}

isglobal-brge/CTDquerier documentation built on Oct. 6, 2022, 1:18 p.m.