ipb-halle/MetFamily
MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies

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Source code
48
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ipb-halle/MetFamily: MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies
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API

API for ipb-halle/MetFamily
MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies

Global functions
%>% Man page
MetFamily Man page
MetFamily-package Man page
addSiriusAnnotations Man page Source code
add_qfeatures Man page Source code
analyzeTree Source code
analyzeTreeForAnnotations Source code
analyzeTreeForFrequentFragments Source code
analyzeTreeFromRoot Source code
analyzeTreeFromRootForAnnotations Source code
bsTooltip Man page
builtMatrix Source code
calcPlotAnnoLegend Source code
calcPlotAnnoLegend1 Source code
calcPlotAnnoLegendForImage Source code
calcPlotAnnoLegendForImage1 Source code
calcPlotDendrogram Man page Source code
calcPlotDendrogramLegend Source code
calcPlotDendrogram_plotly Man page Source code
calcPlotDiscriminativityLegend Source code
calcPlotHeatmap Man page Source code
calcPlotHeatmapLegend Man page Source code
calcPlotHeatmapOld Source code
calcPlotLegend Source code
calcPlotLegend1 Source code
calcPlotLegendForImage Source code
calcPlotLegendForImage1 Source code
calcPlotLegendForImage2 Source code
calcPlotMS2 Man page Source code
calcPlotMS2Legend Man page Source code
calcPlotPCAloadings Man page Source code
calcPlotPCAloadings1 Source code
calcPlotPCAloadings2 Source code
calcPlotPCAscores Man page Source code
calcPlotScoresGroupsLegend Source code
calcPlotScoresGroupsLegendForImage Source code
calcPlotScoresGroupsLegendForImage1 Source code
calcPlotSpectrumVsClass_big Source code
calcPlotSpectrumVsClass_small Source code
calcPlotSpectrumVsClass_small_old Source code
calculateCluster Source code
calculateDistanceMatrix Source code
calculatePCA Man page Source code
castListEntries Man page Source code
colSumsPos_classifier Source code
colSums_classifier Source code
colorLabels Source code
colorPalette Source code
colorPalette2 Source code
colorPaletteScores Man page Source code
colorSubTree Source code
colorSubTreeForAnnotations Source code
colorSubTreeForAnnotations2 Source code
colorVectorToStringForEval Source code
convertToProjectFile Man page Source code
convertToProjectFile2 Source code
createTickLabels Source code
data.numericmatrix Man page Source code
deserializeParameterSet Source code
deserializeParameterSetFile Source code
deserializeParameterSetKeyValuePairs Source code
deserializeSampleSelectionAndOrder Source code
doAnnotation Source code
drawDendrogram Source code
evaluatePutativeMetaboliteFamiliesOfPrecursorSet Source code
evaluatePutativeMetaboliteFamiliesOfPrecursorSet_old Source code
filterData Man page Source code
generatePoints Source code
getAlgorithms Source code
getAvailableClassifiers Man page Source code
getAvailableClassifiers_old Source code
getClassifierProperties Source code
getMS2plotData Source code
getMS2spectrum Source code
getMS2spectrumInfoForCluster Source code
getMS2spectrumInfoForPrecursor Source code
getMS2spectrumInfoForPrecursorLeaf Source code
getMetFragLink Source code
getPcaPerformanceIndicator Source code
getPrecursorColors Source code
getPrecursorSetFromTreeSelection Source code
getPrecursorSetFromTreeSelections Source code
getSetOfSubTrees Source code
getSetOfSubTreesFromRoot Source code
getSetOfSubTreesFromRootForMass Source code
getSetOfSubTreesFromRootForPrecursorSet Source code
getSpectrumStatistics Source code
getTableFromPrecursorSet Source code
leaveOneOutCrossValidation_plsda Source code
load_metfamily_dependencies Man page Source code
metaboliteFamilyVersusClass Man page Source code
mzClustGeneric Man page Source code
numericVectorToStringForEval Source code
parseMSP Source code
parseMSP_attributes Man page Source code
parseMSP_big Source code
parseMSP_chunk Source code
parsePeakAbundanceMatrix Source code
parsePeakAbundanceMatrixQF Man page Source code
performPca Man page Source code
plotFragments Source code
plotFragments2 Source code
plotFragmentsFromDataList Source code
plotLegendWithBalls Source code
plotLegendWithBalls1 Source code
precursorSetToSetOfAnnotationSets Source code
predict_ColSums Source code
predict_Correlation Source code
predict_CosinusDistance Source code
predict_Jaccard Source code
predict_JaccardWeighted Source code
predict_Prod Source code
preprocessClassPlot Source code
preprocessDataForPca Source code
preprocessSpectrumVsClassPlot Source code
processMS1data Man page Source code
readClusterDataFromProjectFile Man page Source code
readMSDial Man page Source code
readMetaboscape Man page Source code
readProjectData Man page Source code
reexports Man page
regExExtraction Source code
reorderAnnotationsForLegend Source code
runMetFamily Man page Source code
serializeParameterSet Source code
serializeParameterSetFile Source code
serializeSampleSelectionAndOrder Source code
setOfAnnotationSetsToSetOfColorSets Source code
sparseMatrixToString Man page Source code
swap_names_and_values Man page Source code
ipb-halle/MetFamily documentation built on April 5, 2025, 5:05 p.m.

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