| addSiriusAnnotations |
Source code
|
| add_qfeatures |
Source code
|
| analyzeTree |
Source code
|
| analyzeTreeForAnnotations |
Source code
|
| analyzeTreeForFrequentFragments |
Source code
|
| analyzeTreeFromRoot |
Source code
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| analyzeTreeFromRootForAnnotations |
Source code
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| builtMatrix |
Source code
|
| calcPlotAnnoLegend |
Source code
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| calcPlotAnnoLegend1 |
Source code
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| calcPlotAnnoLegendForImage |
Source code
|
| calcPlotAnnoLegendForImage1 |
Source code
|
| calcPlotDendrogram |
Source code
|
| calcPlotDendrogramLegend |
Source code
|
| calcPlotDendrogram_plotly |
Man page
Source code
|
| calcPlotDiscriminativityLegend |
Source code
|
| calcPlotHeatmap |
Source code
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| calcPlotHeatmapLegend |
Man page
Source code
|
| calcPlotHeatmapOld |
Source code
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| calcPlotLegend |
Source code
|
| calcPlotLegend1 |
Source code
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| calcPlotLegendForImage |
Source code
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| calcPlotLegendForImage1 |
Source code
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| calcPlotLegendForImage2 |
Source code
|
| calcPlotMS2 |
Source code
|
| calcPlotMS2Legend |
Source code
|
| calcPlotPCAloadings |
Source code
|
| calcPlotPCAloadings1 |
Source code
|
| calcPlotPCAloadings2 |
Source code
|
| calcPlotPCAscores |
Source code
|
| calcPlotScoresGroupsLegend |
Source code
|
| calcPlotScoresGroupsLegendForImage |
Source code
|
| calcPlotScoresGroupsLegendForImage1 |
Source code
|
| calcPlotSpectrumVsClass_big |
Source code
|
| calcPlotSpectrumVsClass_small |
Source code
|
| calcPlotSpectrumVsClass_small_old |
Source code
|
| calculateCluster |
Source code
|
| calculateDistanceMatrix |
Source code
|
| calculatePCA |
Source code
|
| castListEntries |
Man page
Source code
|
| colorLabels |
Source code
|
| colorPalette |
Source code
|
| colorPalette2 |
Source code
|
| colorPaletteScores |
Source code
|
| colorSubTree |
Source code
|
| colorSubTreeForAnnotations |
Source code
|
| colorSubTreeForAnnotations2 |
Source code
|
| colorVectorToStringForEval |
Source code
|
| convertToProjectFile |
Source code
|
| convertToProjectFile2 |
Source code
|
| createTickLabels |
Source code
|
| data.numericmatrix |
Man page
Source code
|
| deserializeParameterSet |
Source code
|
| deserializeParameterSetFile |
Source code
|
| deserializeParameterSetKeyValuePairs |
Source code
|
| deserializeSampleSelectionAndOrder |
Source code
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| doAnnotation |
Source code
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| drawDendrogram |
Source code
|
| evaluatePutativeMetaboliteFamiliesOfPrecursorSet |
Source code
|
| evaluatePutativeMetaboliteFamiliesOfPrecursorSet_old |
Source code
|
| filterData |
Source code
|
| generatePoints |
Source code
|
| getAlgorithms |
Source code
|
| getAvailableClassifiers |
Source code
|
| getAvailableClassifiers_old |
Source code
|
| getClassifierProperties |
Source code
|
| getMS2plotData |
Source code
|
| getMS2spectrum |
Source code
|
| getMS2spectrumInfoForCluster |
Source code
|
| getMS2spectrumInfoForPrecursor |
Source code
|
| getMS2spectrumInfoForPrecursorLeaf |
Source code
|
| getMetFragLink |
Source code
|
| getPcaPerformanceIndicator |
Source code
|
| getPrecursorColors |
Source code
|
| getPrecursorSetFromTreeSelection |
Source code
|
| getPrecursorSetFromTreeSelections |
Source code
|
| getSetOfSubTrees |
Source code
|
| getSetOfSubTreesFromRoot |
Source code
|
| getSetOfSubTreesFromRootForMass |
Source code
|
| getSetOfSubTreesFromRootForPrecursorSet |
Source code
|
| getSpectrumStatistics |
Source code
|
| getTableFromPrecursorSet |
Source code
|
| leaveOneOutCrossValidation_plsda |
Source code
|
| load_metfamily_dependencies |
Source code
|
| metaboliteFamilyVersusClass |
Man page
Source code
|
| mzClustGeneric |
Man page
Source code
|
| numericVectorToStringForEval |
Source code
|
| parseMSP |
Source code
|
| parseMSP_attributes |
Source code
|
| parseMSP_big |
Source code
|
| parseMSP_chunk |
Source code
|
| parsePeakAbundanceMatrix |
Source code
|
| parsePeakAbundanceMatrixQF |
Source code
|
| performPca |
Source code
|
| plotFragments |
Source code
|
| plotFragments2 |
Source code
|
| plotFragmentsFromDataList |
Source code
|
| plotLegendWithBalls |
Source code
|
| plotLegendWithBalls1 |
Source code
|
| precursorSetToSetOfAnnotationSets |
Source code
|
| predict_ColSums |
Source code
|
| predict_Correlation |
Source code
|
| predict_CosinusDistance |
Source code
|
| predict_Jaccard |
Source code
|
| predict_JaccardWeighted |
Source code
|
| predict_Prod |
Source code
|
| preprocessClassPlot |
Source code
|
| preprocessDataForPca |
Source code
|
| preprocessSpectrumVsClassPlot |
Source code
|
| processMS1data |
Man page
Source code
|
| readClusterDataFromProjectFile |
Man page
Source code
|
| readMSDial |
Source code
|
| readMetaboscape |
Source code
|
| readProjectData |
Man page
Source code
|
| regExExtraction |
Source code
|
| reorderAnnotationsForLegend |
Source code
|
| runMetFamily |
Man page
Source code
|
| serializeParameterSet |
Source code
|
| serializeParameterSetFile |
Source code
|
| serializeSampleSelectionAndOrder |
Source code
|
| setOfAnnotationSetsToSetOfColorSets |
Source code
|
| sparseMatrixToString |
Source code
|
