Global functions | |
---|---|
%>% | Man page |
MetFamily | Man page |
MetFamily-package | Man page |
addSiriusAnnotations | Man page Source code |
add_qfeatures | Man page Source code |
analyzeTree | Source code |
analyzeTreeForAnnotations | Source code |
analyzeTreeForFrequentFragments | Source code |
analyzeTreeFromRoot | Source code |
analyzeTreeFromRootForAnnotations | Source code |
bsTooltip | Man page |
builtMatrix | Source code |
calcPlotAnnoLegend | Source code |
calcPlotAnnoLegend1 | Source code |
calcPlotAnnoLegendForImage | Source code |
calcPlotAnnoLegendForImage1 | Source code |
calcPlotDendrogram | Man page Source code |
calcPlotDendrogramLegend | Source code |
calcPlotDendrogram_plotly | Man page Source code |
calcPlotDiscriminativityLegend | Source code |
calcPlotHeatmap | Man page Source code |
calcPlotHeatmapLegend | Man page Source code |
calcPlotHeatmapOld | Source code |
calcPlotLegend | Source code |
calcPlotLegend1 | Source code |
calcPlotLegendForImage | Source code |
calcPlotLegendForImage1 | Source code |
calcPlotLegendForImage2 | Source code |
calcPlotMS2 | Man page Source code |
calcPlotMS2Legend | Man page Source code |
calcPlotPCAloadings | Man page Source code |
calcPlotPCAloadings1 | Source code |
calcPlotPCAloadings2 | Source code |
calcPlotPCAscores | Man page Source code |
calcPlotScoresGroupsLegend | Source code |
calcPlotScoresGroupsLegendForImage | Source code |
calcPlotScoresGroupsLegendForImage1 | Source code |
calcPlotSpectrumVsClass_big | Source code |
calcPlotSpectrumVsClass_small | Source code |
calcPlotSpectrumVsClass_small_old | Source code |
calculateCluster | Source code |
calculateDistanceMatrix | Source code |
calculatePCA | Man page Source code |
castListEntries | Man page Source code |
colSumsPos_classifier | Source code |
colSums_classifier | Source code |
colorLabels | Source code |
colorPalette | Source code |
colorPalette2 | Source code |
colorPaletteScores | Man page Source code |
colorSubTree | Source code |
colorSubTreeForAnnotations | Source code |
colorSubTreeForAnnotations2 | Source code |
colorVectorToStringForEval | Source code |
convertToProjectFile | Man page Source code |
convertToProjectFile2 | Source code |
createTickLabels | Source code |
data.numericmatrix | Man page Source code |
deserializeParameterSet | Source code |
deserializeParameterSetFile | Source code |
deserializeParameterSetKeyValuePairs | Source code |
deserializeSampleSelectionAndOrder | Source code |
doAnnotation | Source code |
drawDendrogram | Source code |
evaluatePutativeMetaboliteFamiliesOfPrecursorSet | Source code |
evaluatePutativeMetaboliteFamiliesOfPrecursorSet_old | Source code |
filterData | Man page Source code |
generatePoints | Source code |
getAlgorithms | Source code |
getAvailableClassifiers | Man page Source code |
getAvailableClassifiers_old | Source code |
getClassifierProperties | Source code |
getMS2plotData | Source code |
getMS2spectrum | Source code |
getMS2spectrumInfoForCluster | Source code |
getMS2spectrumInfoForPrecursor | Source code |
getMS2spectrumInfoForPrecursorLeaf | Source code |
getMetFragLink | Source code |
getPcaPerformanceIndicator | Source code |
getPrecursorColors | Source code |
getPrecursorSetFromTreeSelection | Source code |
getPrecursorSetFromTreeSelections | Source code |
getSetOfSubTrees | Source code |
getSetOfSubTreesFromRoot | Source code |
getSetOfSubTreesFromRootForMass | Source code |
getSetOfSubTreesFromRootForPrecursorSet | Source code |
getSpectrumStatistics | Source code |
getTableFromPrecursorSet | Source code |
leaveOneOutCrossValidation_plsda | Source code |
load_metfamily_dependencies | Man page Source code |
metaboliteFamilyVersusClass | Man page Source code |
mzClustGeneric | Man page Source code |
numericVectorToStringForEval | Source code |
parseMSP | Source code |
parseMSP_attributes | Man page Source code |
parseMSP_big | Source code |
parseMSP_chunk | Source code |
parsePeakAbundanceMatrix | Source code |
parsePeakAbundanceMatrixQF | Man page Source code |
performPca | Man page Source code |
plotFragments | Source code |
plotFragments2 | Source code |
plotFragmentsFromDataList | Source code |
plotLegendWithBalls | Source code |
plotLegendWithBalls1 | Source code |
precursorSetToSetOfAnnotationSets | Source code |
predict_ColSums | Source code |
predict_Correlation | Source code |
predict_CosinusDistance | Source code |
predict_Jaccard | Source code |
predict_JaccardWeighted | Source code |
predict_Prod | Source code |
preprocessClassPlot | Source code |
preprocessDataForPca | Source code |
preprocessSpectrumVsClassPlot | Source code |
processMS1data | Man page Source code |
readClusterDataFromProjectFile | Man page Source code |
readMSDial | Man page Source code |
readMetaboscape | Man page Source code |
readProjectData | Man page Source code |
reexports | Man page |
regExExtraction | Source code |
reorderAnnotationsForLegend | Source code |
runMetFamily | Man page Source code |
serializeParameterSet | Source code |
serializeParameterSetFile | Source code |
serializeSampleSelectionAndOrder | Source code |
setOfAnnotationSetsToSetOfColorSets | Source code |
sparseMatrixToString | Man page Source code |
swap_names_and_values | Man page Source code |
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