Files in ipb-halle/GoldenMutagenesis
A tool to calculate and validate primers for Golden Gate Cloning
.Rbuildignore
.github/workflows/pkgdown.yml
.gitignore
.travis.yml
DESCRIPTION
GoldenMutagenesis.Rproj
LICENSE
NAMESPACE
R/classes.R
R/data.R
R/exported_functions.R
R/functions.R
README.md
data/MSD_BsaI_result_lv2.RData
data/MSD_BsaI_setup_lv2.RData
data/Point_Mutagenesis_BbsI_result.RData
data/Point_Mutagenesis_BbsI_setup.RData
inst/cuf/Salinibacter_ruber_DSM_13855.csv
inst/cuf/arabidopsis.csv
inst/cuf/e_coli_316407.csv
inst/cuf/s_cerevisiae_4932.csv
inst/gm_biocsticker.png
inst/sequences/Yfex_0activesite_for_EF01147142.ab1
inst/sequences/Yfex_activesite_rev_EF01147143.ab1
inst/sequences/pAGM22082_Yfex.gb
man/MSD_BsaI_result_lv2.Rd
man/MSD_BsaI_setup_lv2.Rd
man/Point_Mutagenesis_BbsI_result.Rd
man/Point_Mutagenesis_BbsI_setup.Rd
man/base_distribution.Rd
man/calculate_tm_nnb.Rd
man/cuf.Rd
man/domesticate.Rd
man/get_cu_table.Rd
man/input_sequence.Rd
man/list_cu_table.Rd
man/mutate_msd.Rd
man/mutate_spm.Rd
man/mutations.Rd
man/order_replacements.Rd
man/primer_add_level.Rd
man/primer_prepare_level.Rd
man/primers.Rd
man/print_primer-methods.Rd
man/recognition_site_bbsi.Rd
man/recognition_site_bsai.Rd
notebooks/Domesticate_only_USER.ipynb
notebooks/MSD_USER.ipynb
notebooks/SPM_USER.ipynb
tests/test-all.R
tests/testthat/MSD_265.RData
tests/testthat/MSD_5_265.RData
tests/testthat/MSD_BsaI_result_lv0.RData
tests/testthat/MSD_issue_27.RData
tests/testthat/SPM_5V.RData
tests/testthat/SPM_5V_240E.RData
tests/testthat/SPM_5V_240E_212E.RData
tests/testthat/SPM_BbsI_result_lv2.RData
tests/testthat/SPM_complex_input.RData
tests/testthat/primers_MSD.txt
tests/testthat/primers_SPM.txt
tests/testthat/test-MSD.R
tests/testthat/test-SPM.R
tests/testthat/test-classes.R
tests/testthat/test-cuf.R
tests/testthat/test-errors.R
tests/testthat/test-temperature.R
vignettes/MSD.Rmd
vignettes/MSD2.Rmd
vignettes/MSD3.Rmd
vignettes/Point_Mutagenesis.Rmd
vignettes/QQC.Rmd
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