list_manager: A Class for Managing List Content and Operations
In intermine/intermineR: R Interface with InterMine-Powered Databases

Description Usage Arguments Details Value Author(s) See Also Examples

This class may be called itself, and all the useful methods it has are available through the list objects themselves.

1	list_manager(Service-class)

Service-class

a Service-class object containing the base URL and API token.

The public gene lists for each Mine are available at the websites obtained by the following command: paste0(listMines()["Mine_Name"], "/bag.do?subtab=view")

Get a new ListManager to use with this service. This class provides methods to manage list contents and operations.

list_manager function returns an object containing the following values:

`DEFAULT_LIST_NAME`	"my_list"
`DEFAULT_DESCRIPTION`	"List created with R client library"
`URL endpoints`	LIST_PATH, INTERSECTION_PATH, UNION_PATH, DIFFERENCE_PATH, SUBTRACTION_PATH
`mine`	the base URL
`token`	the API token

InterMine Team

ListManager-methods, ListManager-class

#hashed out example as requires API key
#im.human.list <- list_manager(initInterMine(listMines()["HumanMine"],"TOKEN")) #Add your API Token key
#class(im.human.list)
#resp <- get_list(im.human.list, " PL_Pax6_Targets")
#resp

intermine/intermineR documentation built on Jan. 10, 2022, 4:24 p.m.