getDynamicRange: Dynamic range
In imbforge/dupRadar: Assessment of duplication rates in RNA-Seq datasets
View source: R/getDynamicRange.R
getDynamicRange R Documentation
Dynamic range
Description
getDynamicRange Calculate the dynamic range of the RNAseq experiment
Usage
getDynamicRange(dm)
Arguments
dm
The duplication matrix calculated by analyzeDuprates
Details
This function calculates the dynamic range of the RNAseq eperiment
Value
A list with 2 elements, containing the dynamic range counting all
reads and the dynamic range after removing duplicates.
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# calculate the dynamic range
getDynamicRange(dm)
imbforge/dupRadar documentation built on Oct. 18, 2023, 8:54 a.m.
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View source: R/getDynamicRange.R
| getDynamicRange | R Documentation |
Dynamic range
Description
getDynamicRange Calculate the dynamic range of the RNAseq experiment
Usage
getDynamicRange(dm)
Arguments
dm |
The duplication matrix calculated by |
Details
This function calculates the dynamic range of the RNAseq eperiment
Value
A list with 2 elements, containing the dynamic range counting all reads and the dynamic range after removing duplicates.
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# calculate the dynamic range
getDynamicRange(dm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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