MarkdownBoard-class: The MarkdownBoard class

In iSEE/iSEEu: iSEE Universe

The MarkdownBoard class

Description

The MarkdownBoard class renders user-supplied Markdown into HTML to display inside the app. This is useful for displaying information alongside other panels, or for users to jot down their own notes.

Slot overview

The following slots are relevant to the rendered content:

• Content, a string containing Markdown-formatted text. This will be rendered to HTML for display inside the app.

In addition, this class inherits all slots from its parent Panel class.

Constructor

MarkdownBoard(...) creates an instance of a MarkdownBoard class, where any slot and its value can be passed to ... as a named argument.

Supported methods

In the following code snippets, x is an instance of a RowDataPlot class. Refer to the documentation for each method for more details on the remaining arguments.

For defining the interface:

• .defineDataInterface(x, se, select_info) returns a list of interface elements for editing the Content.

• .panelColor(x) will return the specified default color for this panel class.

• .hideInterface(x, field) will return TRUE for all selection-related parameters.

• .fullName(x) will return "Volcano plot".

For monitoring reactive expressions:

• .createObservers(x, se, input, session, pObjects, rObjects) sets up observers for all new slots described above, as well as in the parent classes via the RowDataPlot method.

For rendering the display:

• .defineOutput(x) will return a UI element to display the HTML.

• .renderOutput(x, se, ..., output, pObjects, rObjects) will add reactive expressions to render the HTML.

• .generateOutput(x, se, all_memory, all_contents) will render the Markdown to HTML via the rmarkdown package, returning a string containing the rendered content in the text element of the output list. The Markdown-formatted content is converted into an R comment for code tracking purposes.

• .exportOutput(x, se, all_memory, all_contents) will create a HTML containing the rendered Markdown, and return a string containing the path to that HTML.

For documentation:

• .definePanelTour(x) returns an data.frame containing the steps of a panel-specific tour. Not that there's a great deal to say here.

Author(s)

Aaron Lun

See Also

Panel, for the base class.

Examples

if (interactive()) {
    iSEE(SummarizedExperiment(), initial=list(MarkdownBoard()))
}

iSEE/iSEEu documentation built on Oct. 11, 2024, 9:20 a.m.