labelSummary: Make a summary for the labels (cell populations) identified...

In hzc363/MetaCyto: MetaCyto: A package for meta-analysis of cytometry data

Description

A function that summarizes the labels (cell populations) identified in different cytometry panels.

Usage

labelSummary(allData, minStudy = 2)

Arguments

allData	A table containing the summary statistics of cell populations. Often is the output of the function "collectData".
minStudy	Minimum number of cytometry panels a label should appear in. Set it >1 to find cell populations identified in more than 1 cytometry panel for meta-analysis.

Value

A data frame summarizing the labels identified in different cytometry panels.

Examples

fn=system.file("extdata","",package="MetaCyto")
files=list.files(fn,pattern="cluster_stats_in_each_sample",
                 recursive=TRUE,full.names=TRUE)
fcs_stats=collectData(files,longform=TRUE)
label_summary = labelSummary(allData=fcs_stats,minStudy=2)

hzc363/MetaCyto documentation built on July 27, 2020, 2:46 a.m.