Files in hzc363/MetaCyto
MetaCyto: A package for meta-analysis of cytometry data
.Rbuildignore
.gitignore
DESCRIPTION
MetaCyto.Rproj
NAMESPACE
R/autoCluster.batch.R
R/backend_functions.R
R/clusterStats.R
R/collectData.R
R/densityPlot.R
R/fcsInfoParser.R
R/filterLabels.R
R/findCutoff.R
R/flowHC.R
R/flowSOM.MC.R
R/glmAnalysis.R
R/labelCluster.R
R/labelSummary.R
R/markerFinder.R
R/metaAnalysis.R
R/nameUpdator.R
R/panelSummary.R
R/plotGA.R
R/preprocessing.R
R/preprocessing.batch.R
R/sampleInfoParser.R
R/searchCluster.R
R/searchCluster.batch.R
R/set2Frame.R
README.md
inst/CITATION
inst/extdata/SDY420/ResultFiles/CyTOF_result/11059_cells_found.573523.fcs
inst/extdata/SDY420/ResultFiles/CyTOF_result/11445_cells_found.573686.fcs
inst/extdata/SDY420/ResultFiles/CyTOF_result/11462_cells_found.573690.fcs
inst/extdata/SDY420/ResultFiles/CyTOF_result/11491-1_cells_found.573697.fcs
inst/extdata/SDY420/SDY420-DR19_Subject_2_CyTOF_result.txt
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Hs90208C20090205_00.583331.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Hs90210C20090205_00.583065.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Hs90211C20090205_00.583066.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Ki67ccr7_Hs60022C200906243.581846.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Ki67ccr7_Hs60025C200907134.583112.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Ki67ccr7_Hs60041C200908104.581964.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/Ki67ccr7_Hs60056C200909217.581912.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/T_Hs60003C200900407A_00.581924.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/T_Hs60011C200900505A_00.581822.fcs
inst/extdata/SDY736/ResultFiles/Flow_cytometry_result/T_Hs60012C200900505A_00.581833.fcs
inst/extdata/SDY736/SDY736-DR19_Subject_2_Flow_cytometry_result.txt
inst/extdata/cluster_stats_in_each_sample_1.csv
inst/extdata/cluster_stats_in_each_sample_2.csv
inst/extdata/cluster_stats_in_each_sample_3.csv
inst/extdata/density_plot.png
inst/extdata/fcs_info.csv
inst/extdata/processed_sample_summary.csv
inst/extdata/sample_info.csv
inst/extdata/sample_info_vignette.csv
man/.Rapp.history
man/autoCluster.batch.Rd
man/clusterStats.Rd
man/collectData.Rd
man/densityPlot.Rd
man/fcsInfoParser.Rd
man/filterLabels.Rd
man/findCutoff.Rd
man/flowHC.Rd
man/flowSOM.MC.Rd
man/glmAnalysis.Rd
man/labelCluster.Rd
man/labelSummary.Rd
man/markerFinder.Rd
man/metaAnalysis.Rd
man/nameUpdator.Rd
man/panelSummary.Rd
man/plotGA.Rd
man/preprocessing.Rd
man/preprocessing.batch.Rd
man/sampleInfoParser.Rd
man/searchCluster.Rd
man/searchCluster.batch.Rd
man/set2Frame.Rd
vignettes/MetaCyto_Vignette.Rmd
vignettes/MetaCyto_Vignette.html
vignettes/Panel_summary.pdf
