System_Expression: System level expression values.
In hyginn/BCB420.2019.ESA: Exploratory Systems Analysis Tools

Description Usage Arguments Details Value Author(s)

exProf Returns the log-normalized expression values for gene provided.

1	System_Expression(sysname, myQNXP)

`sysname`	(character) 5-letter code of system being investigated
`myQNXP`	(matrix) Matrix of expressions. Columns represent experiments and rows individual genes

System_Expression Provides the mean expression level for each experiment present in the dataset. As well, displays which conditions are up and down regulted significantly.

For further information, see details in the System Expression vignette (or load the vignette with vignette("BCB420.2019.ESA-Vignette_McNeil", package = "BCB420.2019.ESA")).

(list) A list containing 3 elements. The first the mean log normalized gene expression by condition. Second and third the conditions where the system is significantly up and down regulated respectively.

Matthew McNei; (aut)

hyginn/BCB420.2019.ESA documentation built on May 29, 2019, 1:23 p.m.