cwlHub-class: cwlHub

In hubentu/RcwlPipelines: Bioinformatics pipelines based on Rcwl

cwlHub

Description

'cwlHub' class, constructor, and methods.

Usage

cwlHub(BFC)

## S4 method for signature 'cwlHub'
mcols(x)

## S4 method for signature 'cwlHub'
show(object)

## S4 method for signature 'cwlHub,ANY,ANY,ANY'
x[value]

title(object)

Command(object)

Container(object)

Type(object)

Arguments

BFC	A BiocFileCache created for 'RcwlRecipes'.
x	A 'cwlHub' object.
object	A 'cwlHub' object
value	The "BFC" ID to extract the subset.

Value

cwlHub: a 'cwlHub' object with slots of 'rid' and 'cache' path.

mcols: a 'DataFrame' with information from the 'BicFileCache' object.

[: a subset of 'cwlHub' records.

title: the 'Rcwl' recipe names for tools or pipelines.

Command: The name of 'Rcwl' wrapped command line tools.

Container: the container name for the 'Rcwl' recipe if exist. Otherwise 'NA'.

Type: The type of the 'Rcwl' recipe, "pipeline" or "tool".

Examples

## Not run: 
tools <- cwlUpdate()
t1 <- tools["BFC178"]
title(t1)
Command(t1)
Container(t1)
Type(t1)

## End(Not run)

hubentu/RcwlPipelines documentation built on Nov. 2, 2022, 1:28 a.m.